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An Automated Tool for Assessing Virus Data Quality
… Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in …
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Crops as Tough as World Cup Turf
… need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists James Schable, Guangchao Sun and Vladimir …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) … that allows for CRISPR-based detection of ssDNA pathogens. With few exceptions, the Cas14 proteins …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … how researchers can gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying … and the use of laboratory resources. Capacity for the plant growth chamber is limited so that will have to be …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … a complex pattern of evolution for genes related to eating plant compounds in both the oceanic and hot spring  … bacteria lack complete biochemical pathways to break down plant material on their own, they likely cooperate with …
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Creating an Energy Market for Miscanthus
… What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a potential fuel for the future. But, … biology and the economic terrain to help make the plant a viable alternative to fossil fuels. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria …
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