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JGI announces final round of 2022 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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How Maize Makes An Antibiotic Cocktail
… genes encoding these enzymes to another plant, such as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI … the team used a battery of techniques. They screened panels of hundreds of maize lines for genetic variation in … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … Ca . Huberiarchaeum. Both organisms are part of the DPANN superphylum of Archaea. This pair is abundant in two … and Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … (DOE) interests, this advancement holds the potential to expand opportunities for bioenergy and bioengineering … of unique cell types in plants such as  Arabidopsis and sorghum. Together, these datasets allow scientists to …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … question, despite of their well-designed sampling and analysis of their data at the time. Following the …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… experience at the JGI, the Genomics Internship Program expanded to include UC Merced undergraduate students through … the difficult early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of … Binghamton “studying polyploids and transposon evolution, expanding on this kind of analysis in more species, as well as …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … leads the Functional Annotation team. MAGs significantly expanded the estimated diversity of Bacteria and Archaea With … Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial isolate genomes …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science User … Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to sift through over 55 billion …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … repository of groundbreaking insights, significantly expanding the horizons of potential functions across various …
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DOE Metrics
… related to the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …
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