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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you … project? A: Combination of: DOE mission relevance Science User community – trying to produce resources for …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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Building Wet and Dry Lab Skills
… mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running … about how to analyze data. Zyiah Mikes : Dr. Yi Zhai is our mentor for our experimental work or our wet lab stuff. …
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Pinning Down a Piece of Photosynthesis
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s … in complementary ways to investigate this protein domain. Scientists at Brookhaven National Laboratory’s NSLS-II used …
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants
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Three mutations repurpose a plant karrikin receptor to a strigolactone receptor
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An orphan gene BOOSTER enhances photosynthetic efficiency and plant productivity
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Recruitment, rewiring and deep conservation in flowering plant gene regulation
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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Toward More Efficient Artificial Photosynthesis
… and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using … current natural processes and use it as a sustainable resource for making high-value bioproducts. As a step toward … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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