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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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Rex Malmstrom
… stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
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Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species
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Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens
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