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From Berkeley to Binghamton: Tracking Strawberry Evolution
… is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature Communications paper that builds off their early collaborations that could help crop … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… ramorum genome. The JGI generated the organism’s DNA code in tandem with a closely-related plant pathogen … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the …
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Extracting the Secrets of Secondary Metabolites
… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … luminescens and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … gene and mutually exclusive lox sites. Ultimately, this process enables researchers to identify strains able to …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… Additional efforts in metabolic engineering and biocatalyst design will target sustainable energy solutions, focusing on … seven researchers are returning, including one previous New Investigator awardee.  The CSP Annual call is focused on … learn more about this call, as well as our smaller-scale New Investigator and Functional Genomics calls, here on our …
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JGI Hosts GPU Hackathon in May
… May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing … Officer Kjiersten Fagnan of the upcoming event. “The tools we use to process and analyze these data are diverse … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …
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An Earth Month Look at Sustainability Efforts at the JGI
… of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a … — that works to prepare the IGB to be the first Lab building with laboratories where 90% of landfill waste is … laid in Walnut Creek before people moved into the new building,” Fulton said. For example, even before moving …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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JGI-USCCN Strain Sequencing Opportunity
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SPRUCE-ing Up Science
… computer program would best serve their quests related to processing RNA-sequencing information. According to … and a final round of presentations.  “That really helped build my communication skills. Their questions were often … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… along with its life cycle. For most bacteria, their DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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