Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
Results
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar
Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
SpaRC: scalable sequence clustering using Apache Spark
Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
A Guide to Gene‐Centric Analysis Using TreeSAPP
Visualizing metagenomic and metatranscriptomic data: A comprehensive review
High‐resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities
