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Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric … cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …

… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …

… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … Molecular Biology at ORNL Himadri Pakrasi, Washington University in St. Louis on “Solar Energy Conversion in …

… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …

… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE Office of Science … Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model Soil …

My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable …

Kaushal Sharma, one of five Antioch High School rising juniors who participated … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and …

… and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …

Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …

A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …

A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …