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JGI at the AGU Fall Meeting
Proposals December 9  4:15pm PT (online) Town Hall on how the Facilities Integrating Collaborations for User … 15 12:51pm Joan Damerow, Berkeley Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… function and activity of phytoplankton genes and looking at how communities of these microalgae interact, researchers … time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than non-polar algae. They … analysis as well as laboratory culture experiments showed that those zinc-binding proteins are important for …
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Ancient Algae Reveal Secrets of Plant Evolution
… , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene … existed in close algal relatives  to terrestrial plants showcases how early plants built upon an ancient genetic framework to …
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Building Sphagnum Genomic Resources
… soil carbon. In high latitudes, sphagnum can also act as a protective layer insulating permafrost from the warming … Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond to increases in …
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When “The Blob” Made It Hotter Under the Water
The Blob, researchers developed a preliminary model of how marine microbial communities are affected by warming … studies could help researchers improve predictive models on how climate change may impact marine microbes and by …
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A One-Stop Shop for Analyzing Algal Genomes
… components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … experiments; study DNA methylation, which gives clues to how an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems …
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A One-Stop Shop for Analyzing Algal Genomes
… components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … experiments; study DNA methylation, which gives clues to how an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems …
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The Busy World of Deep Sea Eruptions
… hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, … Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.   …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
In each garden, switchgrass plants clonally propagated from cuttings represent a diverse collection sourced from half of … in species with large and complex genomes,” said Lovell. “However, new sequencing technologies have allowed us to … trying to leverage these discoveries to better understand how plants tolerate stresses and challenges in the natural …
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Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules
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Streamlining Regulon Identification in Bacteria
… genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential … (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… users will enable us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI … One , engineering different gene deletions in four gammaproteobacterial species, and then removing the editing …
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