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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in …
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JGI@25: From Life at the Extremes to Editing Genomes
… National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … This is the first science Nobel awarded to two women, with Charpentier and Doudna bringing the total number of … system. For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial … at the Biomedical Sciences Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… and recaps of all three keynote talks follow, starting with Bruce Hungate. Other videos of talks from the JGI … like poetry.” True to the introduction, Hungate spoke with real enthusiasm, even delight. He qualified his talk … making secondary metabolites, noting that “this makes forming hypotheses and the way we go about future biological …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe … diversity of microbes by looking at protein function within them. Kyrpides and Roux also worked together on the … evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy Schmutz’s …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three … be easily transformed, traits that make them easy to work with bioinformatically and in the laboratory. “We are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows … materials, with eight or nine different teams then performing analyses that they will all compare. Thanks to robust …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey and program organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities Center …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research Scientific Computing … To put these efforts into perspective, we caught up with JGI staff, collaborators and users to see how software …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … a diverse workforce and scientific community (working with the JGI) as well as our efforts in workforce …
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How to Target a Microbial Needle within a Community Haystack
… would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their roles within their environments. Summary The traditional shotgun …
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JGI Welcomes New UEC Members
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