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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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Axel Visel
… a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, … De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of … relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  KBase Co-PI Bob …
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JGI Accepts 17 Proposals for Community Science Program
… Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … group of fast-growing tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… healthy soils – are at the heart of sustaining food and bioenergy security for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Program Large Scale call. This portfolio accelerates bioenergy innovation through genomic discovery across diverse … and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with optimized … approaches to unravel functional capabilities of plants, microbes and microbial communities, and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… questions, a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … could then use these proteins to recognize individual pathogens and pull them out, like fish on a fishing line, … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and … “Fungi are the masters of adaptation,” Wint explained. The fungal kingdom contains over one million different species … theory — the most expressed genes found across each of the fungal species were protein-coding hotspots. “Ensuring that …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… Earth’s carbon as well as material that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … which is tough on the type of microbes that break down plant matter. This means plants don’t fully decompose in …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Riverside and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and …
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Mining Metagenomes for Cas Proteins
… (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … that allows for CRISPR-based detection of ssDNA pathogens. With few exceptions, the Cas14 proteins … Cas9 genes . The work also used resources at the National Energy Research Scientific Computing Center , a DOE Office …
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