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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and … a proposal? A: If you’re presenting preliminary data that’s been published, or if you want to give some background of …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … we actually started doing when starting the lab. It has been, especially from an early career perspective, been … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics … portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… for our 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — … questions.”  Of these 18 scientists, eight have never been involved in a JGI proposal. Three are previous …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied to DNA methylation analysis as well as … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open … ability of the principal investigators of approved JGI user projects to publish the primary report of their data without …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment … that the JGI has put together. In collaboration on a project with the Newman lab, an important question arose: … in the rhizosphere but also abundant everywhere in the earth’s soils. While she admits that it “0.25% doesn’t seem …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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