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A single-cell genome perspective on studying intracellular associations in unicellular eukaryotes
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Honey Bee Gut Microbiota Divvy Up Dinner
… findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades …   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established and … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions
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Large-scale replicated field study of maize rhizosphere identifies heritable microbes
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A comparative genomics study of 23 Aspergillus species from section Flavi
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CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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