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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Supercharging SIP in the Fungal Hyphosphere
… The process involves “labeling” a given substance by applying a stable isotope to it. The isotopes are … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Charting Progress toward Professional Goals
… on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … with an experienced researcher who serves as their mentor. By contributing to projects that will help them build skills … SEED program at UC Berkeley. Sally Liao came in through the DOE  Science Undergraduate Laboratory Internship program, …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
Learn more
A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their corresponding pages at  https://phytozome-next.jgi.doe.gov . If a genome from v12 is present in v13, the …
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iPHoP: A Matchmaker for Phages and their Hosts
… program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … Research, Early Career Research Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by …
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The fungus that made itself at home
… lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, … and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting …
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Honey Bee Gut Microbiota Divvy Up Dinner
… that pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in … — are digested further along: first, the pectin, mainly by  Gilliamella ; then the hemicellulose, mainly by  Bifidobacterium.  The process is a division of labor by …
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JGI-KBase Panel at SACNAS
… get credit for their contributions to science. A panel of DOE researchers, program managers, and intern alumni will …
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