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Prokaryote Program User Advisory Committee
… The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the effective … and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs' management teams on how to …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. … and sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … found the salinity changes led the algae to express genes involved in freezing resistance, adapting to cold …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, … here , here and here ), and the data has been used to better understand arsenic mobility and to better …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation
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De novo Nanopore read quality improvement using deep learning
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Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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The Surprising Structure of a Shrub Willow Sex Chromosome
… feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, … for females. To better understand how sex determination works in shrub willow, researchers investigated the … sequences so that their sequences read the same (or nearly) backward and forward, like the name “Hannah.” …
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An Automated Tool for Assessing Virus Data Quality
… Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … tool called CheckV that can automatically do both. The work was led by research scientist Stephen Nayfach, the … from the host organism. With the virus-host boundary clearly defined using functional annotation methods, it was …
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A Shrubbier Version of Rubber
… at producing latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to North America: guayule.  This episode was made in collaboration with our friends at the HudsonAlpha Institute …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … effort by a team that included researchers at the DOE Joint Genome Institute, a DOE Office of Science User … by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to establish …
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