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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have … rot fungi reveals the genomic changes Serpula lacrymans has undergone in adapting to manmade environments. The Impact …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers … are a way to measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide …
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Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the platform delivers … and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … to JGI data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward … Nigel Mouncey is the Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … rate of 0.9 grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint … (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This … and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI … the publication of multiple highly cited papers during the last decade” by Clarivate Analytics. This year’s list … tool called geNomad that identifies and classifies mobile genetic elements based upon their gene content and their …
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