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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, …
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Decoding Yellowstone’s Microbial Mats
… Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a DIY … services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their creation to their …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by Hal …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department … wide — from implementing new data visualization tools, to using natural language processing techniques to categorize …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene editing as a new tool. In order to know …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the …
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Meeting report: International soil virus conference 2024
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular movement, … at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the platform …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … inhibit microbial methane production. Another effort is in using microbial understanding to formulate a vaccine for …
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