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Forming Scientific Connections and Building Community
… had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed … Being an intern here has allowed me to make connections with the top of the top scientists in their fields. I have … great meeting the wonderful people who work at JGI and learning about their research.” Mentor: Juan C. Villada …
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Ancient Algae Reveal Secrets of Plant Evolution
… — ultimately allowing them to adapt to life on land. Learning that these genetic tools existed in close algal … to thrive outside aquatic environments. The Impact A deeper understanding of how plants adapted to terrestrial … resilient crop varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome … on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in marine and … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very …
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An Integrated Dataset to Understand Ecosystem Interaction
… managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … — illuminating the molecular mechanisms for adaptation within the trees. The data set generated is 25 terabytes in …
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Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments
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Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance … range of habitats — from brine pockets and melt pools, and within the water column. They are also the primary producers …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey and program … has been a pillar stepping stone in my bioinformatics learning and career development,” she noted. …
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Crysten Blaby-Haas
Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein … Comm 15:3167. Hammack AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev …
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Fungal Friends or Foes in Plant Roots
… genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded … DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. This work …
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Three Join the JGI User Executive Committee
… lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological … in crops. He has been a PI or Co-PI on five user projects with the JGI, as well as served on review panels for the JGI … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …
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Eelgrass Proves to Be Much Younger Than We Thought
… that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean occurring within the last 40,000 years. The Impact Eelgrass represents … normally craft a genetic clock based on its divergence with a  different species. However, eelgrass didn’t have a …
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