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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the JGI Algal Program, which explores genomics of algal diversity and biology to support basic science as well as … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short Palindromic Repeats … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity of plants and animals by combining computational …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The … and analysis will be performed by the JGI at no cost to the user. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. …
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FICUS-NERSC/KBASE
… Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … sequences based on the principles it learns from the data about genetic structure — carrying with it the potential … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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