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JGI Workshop at SIMB NP Meeting
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … these vents, and underwater volcanoes,  researchers studied microbial communities across five oceanic regions. In doing … The bacteria, archaea and other microorganisms of the microbial communities around these vents survive in very …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate … analyze but also create DNA sequences mimicking an array of microbial life. By leveraging massive user-generated … languages to study genomes,” Wang explained.  And since microbial genomes are simpler to model than large plant or …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … reusable, and more insightful, for the future of studying microbial communities.   …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … that indicate repelled attempts to infect and lyse the microbial cells. This demonstration of the virus-host arms … National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … what falls within that single beam. When it comes to microbial communities, scientists have historically been … of microbes through a novel approach to better understand microbial communities by looking at protein function within …
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Tomas Tyml
… and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are notoriously difficult … an arduous wet lab process. Typically, after incubating microbial communities with labeled food or water, the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … has changed our understanding of the microbiome and the microbial sciences field. Roux will be recognized at the … His project, “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a …
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Frequently Asked Questions: Proposal Submission
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Tracking the Origins of Methane-Producing Microbes
… recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … Following that work, they partnered once more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the microbial communities collected. The team noticed some of …
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