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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … paper is the first result of the collaboration with the JGI, where they are partnering with  Yasuo Yoshikuni and  … that we plan to offer to users in the near term,” added JGI Director  Nigel Mouncey . Hal Alper will be speaking on …
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Virus Discoveries that Keep Getting Bigger
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer … Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating … the fungi were making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen …
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Learning to Look
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … and his colleagues developed first worked on a reference dataset that included genome sequences known to be …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … year and continue working on their research project! The JGI-UC Merced internship program was founded in 2014 with … Making Big Data Metagenomic Clustering Scalable …
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Viruses Reprogram Cells into Different Virocells
… U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy … and operated under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was funded by a …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science award. The DOE Joint BioEnergy …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science …
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Evolution of a Fungal Gene Expression Regulator
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of … mechanisms of genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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