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… of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … students and eight graduate students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, was …

… bioinformatics pipelines to transition bench-scale methods into production workflows. He developed and scaled the … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …

… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … sequence and then analyze the genomes and multi-omics datasets for algae that can be used for large-scale …

… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … assembly. Integration of this type of “external mapping” into IMG is currently being revamped but we can already …

… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … palette of options; beyond off and on, scientists can determine the level of gene expression by the gradations. The … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …

… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … iPHoP program brings several of these approaches together into the same workflow, then uses a machine-learning model … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …

… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … hot springs, including Dewar Creek. Continuing explorations into this unique environment, researchers from the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …

… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …

… teams on how to operate and manage the particular Science Program. …

… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … stitch the pieces together and attempt to put them back into the original genomes. These metagenome-assembled …