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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported under contract no. …
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A Grass Model to Help Improve Giant Miscanthus
… allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Simon Roux
… to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … Pascal, France … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… to the DOE mission, switchgrass is among the JGI Flagship Plants . Since 2007, the JGI has been working on identifying … The switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Game On: High School Students Drive Everglades Metagenomics Study
… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … was preparing to teach a second year A-Level Advanced International Certificate of Education (AICE) Biology class at … Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have … “While I never said this out loud,” Drell said, speaking to users and staff at the JGI’s 2022 User Meeting, "I think I …
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get … program managers, and intern alumni will introduce projects designed for students to gain research experience …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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