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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and … angiosperms, suggesting they are evolutionarily conserved across plant lineages. They hypothesized that certain gene … of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …
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Trent Northen
… 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Tanja Woyke
… metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell … organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and diversity in the era of genome-resolved … User Programs … Education … Awards and Service … Selected Publications …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences … which allows researchers to conduct comparative analyses across the genomes of multiple species in a single … ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes …
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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple … were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the … of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … in plant research laboratories and plant biology courses across the globe for insights into reproductive, space and … by US National Science Foundation (NSF; grant PRFB IOS-1907220 to D.B.M.; grant MCB-1856143 to R.J.S.; grant …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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Doubling Down on Known Protein Families
… but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and … the protein families up by environment and found only 7% of protein families were shared across all eight … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a … observations with data on microalgal communities across different ocean latitudes from pole to pole, using …
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa … factors shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in … active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve …
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