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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands couldn’t exist without … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s …
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … al., 2023. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
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The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity … the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … bacterium was doing in the mangroves. “Mangroves and their microbiomes are important ecosystems for carbon cycling . If …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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