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Tanja Woyke Elected to American Academy of Microbiology
… American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 … AAM Fellows is based on their records of scientific achievement and original contributions that have advanced … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked to … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the genome of the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common … Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to darken. Called …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a single …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per year. …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, Arizona State University …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke … and combining the information with previously published datasets. The work was  recently published in the journal  … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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MGM Workshop at Fisabio Summer School 2026
… hands-on sessions in bioinformatics and biostatistics. Several sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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