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Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation
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Phylogenetic and metagenomic analysis of Verrucomicrobia in former  agricultural grassland soil
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A standardized quantitative analysis strategy for stable isotope probing metagenomics
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A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate
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AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids
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Crops as Tough as World Cup Turf
… conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists … Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just happened to be the same species that …
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iPHoP: A Matchmaker for Phages and their Hosts
… are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … Arkin, AP, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated … Characterization of simplified soil communities with high and low carbon use …
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Viruses Reprogram Cells into Different Virocells
… between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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