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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency

Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages

MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.

Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary

Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System

Reconstructing each cell's genome within complex microbial communities—dream or reality?

Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution

Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

A survey of computational approaches for characterizing microbial interactions in microbial mats

A Step Toward Controlling Soybean Rust

… reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s 2016 Community Science Program … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA) proposed sequencing a … to counter soybean rust disease. Soybean itself is a JGI Flagship plant genome , and JGI published its genome …

Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence.

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.