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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Katherine Louie
… nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and … Selected Publications …
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IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
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Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
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Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis
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Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
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Insight Into the Molecular Mechanisms for Microcystin Biodegradation in Lake Erie and Lake Taihu
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Insights into the action of phylogenetically diverse microbial expansins on the structure of cellulose microfibrils
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SPRUCE-ing Up Science
… 2013, this field was just beginning to develop and expand into the world of evolutionary biology. And around that … with renowned scientists who were involved in the Human Genome Project, or computational biologists who were … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
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