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Discovery of FoTO1 and Taxol genes enables biosynthesis of baccatin III
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … Metabolic Engineering Approach for Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … Metabolic Engineering Approach for Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome … Algal Datasets …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire … Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … fantastic scientific results this year by assembling a collection of large datasets that will enable scientists to …
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Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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