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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … study’s senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things … paper is the first result of the collaboration with the JGI, where they are partnering with Yasuo Yoshikuni and Ian …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … study’s senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things … paper is the first result of the collaboration with the JGI, where they are partnering with  Yasuo Yoshikuni and  …
Learn more
Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus … overall connections. Theo Loureaux : I wanted to first discover new methods with tools I wasn’t familiar with in terms …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three … innovative environment where collaboration and research discovery are at the forefront.” Mentors: Rex Malmstrom, …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome … of Konstanz and the University of Vienna  reported recovering draft metagenome-assembled genomes for seven novel …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… is the first to dig into a forest floor ecosystem to discover what carbon- and nitrogen-metabolizing enzymes are … important for characterizing fungal genes, because, unlike bacteria, they often carry interrupting sequences, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Wet and Dry Lab Skills
… on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running … Alabama A&M majoring in Biology, and I'm also an intern at JGI with Yi and Sharon. Yi Zhai : Hi, everyone. My name is … how to run Dori, which is a compute cluster owned by JGI, and used Jupyter notebook for a programming environment …
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The fungus that made itself at home
… habitat, adapting to thrive in built environments. Summary Unlike white rots, brown rots break down only the cellulose and hemicellulose, leaving the lignin … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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Improving the Cacao Genome and Phytozome
… for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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