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Streamlining Regulon Identification in Bacteria
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi Otani. Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey …
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How to Target a Microbial Needle within a Community Haystack
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … using a specific group of marine bacteria called “Vis6” that are found in North Sea algal blooms. The workflow … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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Gotta Catch 'Em Gall
… how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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A Grass Model to Help Improve Giant Miscanthus
Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE Office of Science, Office of … and Environmental Research (BER), grant nos. DE-SC0006634 and DE- SC0012379. The generation of the tetraploid M. …
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Eric Olo Ndela
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional … using bioinformatic software called FastTree and identified 62 distinct AT groups. However, no single AT group was …
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Antonio Camargo
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Nandita Nath
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both …
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Making a Lichen Together
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available … and by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint …
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Ancient Algae Reveal Secrets of Plant Evolution
… genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US …
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