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Denoising inferred functional association networks obtained by gene fusion analysis
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The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
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Restoration and Modification of Magnetosome Biosynthesis by Internal Gene Acquisition in a Magnetotactic Bacterium
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … and nutrients to trees; plant pathogens colonize living plants to feed on them.  Across the forest types, Martin and his team combed soil samples to see which genes these three fungal guilds used to grow and …
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Marine Microbe Contains Multitudes
Summary To study the lifestyles of SAR324, lead author Dominique Boeuf and colleagues set sail on research cruises … to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes … University of Hawaii at Manoa — and colleagues were able to see that SAR324 was made up of four ecologically distinct …
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Trent Northen
… in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for … application of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: …
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10 From JGI on the 2019 Highly Cited Researchers List
… list focused on Highly Cited Papers, defined in the Methodology section as “those that rank in the top 1% by … the team established community gardens of switchgrass plants in 10 different field sites on a north-south gradient … version of the JGI plant portal Phytozome, which is overseen by 2017 Highly Cited Researcher David Goodstein. Go …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary metabolites … employing CRAGE, researchers are no longer limited to using model host microbes; theoretically, any microbe can serve as …
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Doubling Down on Known Protein Families
… communities, scientists have historically been unable to see beyond the beam — worse, they didn’t even know how big … by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … also tried to hone in on the function of the genes via 3D modeling, and comparing structures of the unknown to those …
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Tracking the Origins of Methane-Producing Microbes
… tons of the carbon dioxide trapped in biomass each year to do so. As such, they are considered to have a substantial … methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … Chan Zuckerberg Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and …
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