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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … because they typically contain salts and other contaminants that interfere with metabolomics analysis.  Q: Can you give … natural soil? A:  It depends on the soil. Typically soils that have a high clay content are not well suited for …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is … will demonstrate to students (and their mentors) how to begin establishing a professional presence through getting credit for any …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … have  recently published a Nature Communications paper that builds off their early collaborations that could help crop breeders and researchers predict how …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                 … attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental … national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They …
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First Monoploid Reference Sequence of Sugarcane
… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … monoploid reference sequence using a targeted approach that focused on the gene rich part of the genome by … different variants on different chromosomes, information that can be used to assemble a more complex and more …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the strange, beautiful properties of … shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, biologists at …
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IMG/VR
… through the more than 2 million viral sequences available in IMG/VR v3. …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. … Combining forces with UC Berkeley to seek elusive gene-editing …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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