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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and … was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … here so that, Session said, other scientists can “follow a step-by-step process to apply it to any genome of interest.” …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC … the National Science Foundation and the National Institutes of Health. The work conducted by the U.S. Department of …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … of the sex chromosomes of one male and one female specimen. Stephen DiFazio, plant biologist at West Virginia University … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and from the FRM/FSER (FRM/FSER202302017064) to P.-M.D., from the CNRS to P.-M.D. and H.P. (80|PRIME …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This research was funded in part by DOE Grant DE-SC0014081 (to N.V., B.C., C.G., G.P., M.M., J.H., J.S., Y.Y., J.A.O., …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate …
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A Plantiful Future: Xiaohan Yang
… Xiaohan Yang, a scientist at Oak Ridge National Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, …
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