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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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Taking Stock of the Known and Unknown Microbial Space
Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial …
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Accelerating Metagenomics Discoveries with Deep Learning
… assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free …
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Tracing the Evolution of Shiitake Mushrooms
… structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science …
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Boosting Small Molecule Production in Super “Soup”
As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and that’s one of these things that we’re really excited about in the future, to see if that’s possible.” Alper …
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Digging into Microbial Ecosystems Deep Underground
Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student Kaela … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … have tapped into the resources and capabilities of both the JGI and the Environmental Molecular Science Laboratory …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the … in sequence in real time at an atomic resolution. We are excited to start our collaboration to expand these operando …
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Better Genome Editing for Bioenergy
To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … negative if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set …
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Understanding Wildfire Recovery, Starting in Soil
… clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). EMSL and the JGI are DOE Office of Science User …
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A One-Stop Shop for Analyzing Algal Genomes
… complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Acids Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, …
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A One-Stop Shop for Analyzing Algal Genomes
… complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Acids Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, …
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