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… from The Ohio State University and the University of Michigan studying how virus infections cause significant … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

Every year, the JGI sequences around 35,000 samples — from plants, algae, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — but not doors — and robots handle a bunch of benchwork. …

… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …

The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …

… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …

A group led by JGI scientists have made strides in improving and applying a … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …

A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …

Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference …

… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

The 11th cohort of JGI-UC Merced interns pick highlights from their summer … workshops, data carpentry hackathons, and also made new friends while working on their summer projects. Watch …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …