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Simon Roux
… approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The ISME Journal …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in marine and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with the …
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Ian Blaby
… positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of … Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … first used CRAGE to engineer domesticated bacterial strains with novel biosynthetic gene clusters (BGCs). BGCs make … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… analysis capability available through the  Community Science Program (CSP) . This includes mass … and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at … or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are these samples …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced genome, and these gardens allow …
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MGM Workshop at Fisabio Summer School
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning …
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MGM Workshop at Fisabio Summer School 2025
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and is working to address …
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