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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a catch: SIP labwork and analysis …
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … He is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo …
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Viruses Reprogram Cells into Different Virocells
State University and the University of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … from uninfected cells. Duhaime and Sullivan are co-corresponding authors, while the study’s lead author is …
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JGI@25: Studying Sorghum’s Survival Skills
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … Both sugarcane and corn share this photosynthetic pathway. However, neither crop shares sorghum’s hardiness, so …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute … networking opportunities and fosters discussions on how to capture and characterize viral diversity, understand … and large-scale data analysis to better characterize how viruses infect soil microbes and influence how soil …
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JGI@25: Stories from Intern Alumni
… we’ll be revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … Ho, Maria Mendoza, Erone Cao and Sabah Ul-Hasan share how these experiences have influenced their career journeys. …
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New Research Sheds Light on Diversity in the Deep Sea
… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … ecosystems. This means they hold clues for understanding how life thrives in extreme environments. They also produce … 40 samples from five oceanic regions to better understand how these hydrothermal ecosystems function in such extreme …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… virologist and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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JGIota: Sequencing Shiitakes with David Hibbett
… shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each … collaboration.  JGI Director Nigel Mouncey reflected on how the JGI-UC Merced Intern partnership had become a … and alumni shared their perspectives on the program and how much it meant to be a part of it all. Among them was …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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