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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … new database was called IMG/VR. It featured samples from different ecosystems all over the world, including 3,908 … target specific microbes or change the behavior of this bacteria — most likely there is a virus that is already …
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Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
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The Genome Sequence of Methanohalophilus mahii SLPT Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… have evolved mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more … our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This …
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Cataloging the Microbes that Manage the Health of River Systems
… provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They also … and nutrient flows that the microbes in these bodies of water help regulate. However, the microbes also interact …
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Three Join the JGI User Executive Committee
… Professor in the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a research group investigating the physiology and evolution of marine aggregates and biofilms. She credits the JGI user …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… — one previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as …
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Webinar: MycoCosm Tutorial
… protein info, is there any way to look for this ID but in a different strain assembly (same organism) without having to … are especially good to cluster together similar genes in different strains or related species. 21.  Q: How can we … with long read technology? and how do you present the different alleles? A: Yes, MycoCosm can support diploid …
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Picking Up Threads of Cotton Genomics
… underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … remarkably high overall sequence similarity yet drastically different fiber morphology between domesticated ( Gossypium …
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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