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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. …
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous effort, an international consortium … practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now …
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Better Genome Editing for Bioenergy
… in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help … all guides are effective. To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in a …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. While a …
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What Happens Underground Influences Global Nutrient Cycles
Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national … call. Submitted proposals addressed one of the following focus topic areas: Biofuels and bioproducts, … features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy …
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Dan Rokhsar
Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three … methods applicable to the diverse eukaryotic species, which they have applied and refined in the sequencing and … biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the development …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to … scientists and biostatisticians. Through collaborations with internal and external scientists, the Wang group has …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division.. …
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David Goodstein
With a background in experimental and computational surface … efforts expanded to include basal metazoans and plants. Working with a talented team of scientists and software engineers, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — one thing is for …
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