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Dan Rokhsar

… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … genome analysis, sequence-based genetic methods, and comparative developmental biology. In addition to this … AB in Physics, Princeton University, NJ MS in Theoretical …

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Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions

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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes

… more complete genomic results from single cells. The Science Studying the genomes of microorganisms is … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …

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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

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An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots

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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus

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The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet

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The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings

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Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose