Results

JGI Workshop at SIMB NP Meeting
Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … accessing these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Ian Blaby
National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at University of Florida and UCLA he has worked with a wide range of … view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of Wales, …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Integrating Experimentation with Data
… to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … the sequence cap? A(nswer): Proposals that are looking at multiple areas or multiple ways to answer questions are … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including … 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic data, …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for … she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the …
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