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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what … eating are microbes.   And so that led him to come to me with the question, well, how are the microbes being affected … we need to survive, that humanity needs? And some of these discoveries might actually, I mean, they literally may be …
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John Vogel
… switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts … in the Brachypodium distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial … living everywhere from soils and stomachs to the deep sea are capable of doing a lot of unique things when it …
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A Model System for Perennial Grasses
… ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … has started a new position as the Senior Manager, Machine Learning at Pilot Flying J. Nathaniel Brown was a 2022 …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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When “The Blob” Made It Hotter Under the Water
… that takes carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … organic matter scavengers. This preliminary model aligns with several other studies on the potential effects of …
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