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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … continued to seek other ways to make morels fruit under artificial environments, a technique to supply exogenous …
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … proposal. The next step for the team was to try to identify what natural products the fungi were making. So, Trent …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … and short-chain alkane oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … databases. In this case, the machine “learned” to identify a certain type of bacterial viruses or phages called …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and … State University, Bioengineering & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these … and Environmental Research “There are two kinds of scientific revolutions,” Ari Patrinos opened with this quote from … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close … of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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A Step Toward Controlling Soybean Rust
… is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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