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… (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … drought condition, no water was given during weeks 3 to 8 before flowering. In the post-flowering period …

The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove lignin … some ability to slowly break down lignin (think of a fallen, decomposing tree in the forest). Because oxygen is … (MAO), National Science Foundation grant MCB-1553721 (MAO), Office of Biological and Environmental Research …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of 50 letters of intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew …

… anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … science that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . …

… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … In contrast, assembling the sugarcane genome was more challenging and took more than a decade because there were … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also … enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of …

… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … in life sciences 2006 … Education … Selected Publications … Awards and Honors …

Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of … with switchgrass biology. The information could be useful toward the DOE’s interest in harnessing the crop … (Watch SCGSR fellows Nick Reichart and Ian Rambo talk about their experiences at the JGI.) Igor Grigoriev hosted …

Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 … enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of …

… work, and applying them to environmental and energy challenges. But not all scientists have the expertise and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … mining, empowering research collaborators to take on ambitious synthetic biology experiments. A recent special issue of …

… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …

… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … production. … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …