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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … expression in both plant cells and fungal cells. Using a technique called single nuclei RNA sequencing, the …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … This research was supported by the NSF awards DEB- 1456588 to D.H. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … groups joined the project to contribute to the data for six new species. I must mention that some of the members from …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to understand …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop … breeders aren’t interested in waiting decades to develop new crops. One example is an ongoing collaborative effort to … to switchgrass through more targeted genome editing techniques to customize the crop for additional end …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … This work was supported by the Czech Science Foundation (18- 25706S and …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding … in the haloarchaeal gene pool, a team led by University of New South Wales (UNSW)-Sydney professor Rick Cavicchioli … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately … affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by killing … framework that combines and builds on two standard techniques for identifying viruses and plasmids. Until now, …
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Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! … highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI … Each portal lists a contact, or you can reach out via the form on our website.   … Looking for BBTools? Find it here.  …
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