Results

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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Building on basic metagenomics with complementary technologies
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The Airborne Metagenome in an Indoor Urban Environment
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CoverM: Read alignment statistics for metagenomics.
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iPHoP: A Matchmaker for Phages and their Hosts
… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … and his group study one specific alga,  Emiliania huxleyi  (sequenced by the JGI), and the virus that infects it,  … genome evolution. TEs are the largest component of a genome sequence, accounting for 45% of the human genome and 50-80% …
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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families …
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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