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Individual genome assembly from complex community short-read metagenomic datasets
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Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms
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JGI@25: Fueling Investigation into Methane-Making Microbes
… our collaborations and capabilities to enable great science that will help solve energy and environmental ch … map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that started six years earlier, researchers …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Digging into Microbial Ecosystems Deep Underground
… these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating …
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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Evolution of a Fungal Gene Expression Regulator
… date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … Resource Center (GACRC) and Georgia Genomics and Bioinformatics Core (GGBC) at the University of Georgia …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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JGI@25: Solving the Mystery of the Missing Oil
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental …
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An Automated Tool for Assessing Virus Data Quality
… the completeness of these sequences and complements a community effort to develop guidelines and best practices … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure …
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