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SPRUCE-ing Up Science
… Merced internship program, Lawrence is now a postdoctoral researcher at the Oak Ridge National Laboratory (ORNL), … Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … to explain the results. Based on the type of questions and feedback from his JGI audiences, he began to understand what …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Most of the attention on Olpidium was from agricultural research. Several species of Olpidium are obligate … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … to re-visit the Olpidium genome data . Taking the advantage of rapid development of binning methods, we were able …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW … Dent worked with JGI mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant …
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JGI Accepts 17 Proposals for Community Science Program
… group of fast-growing tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery … wildfire.  Eight of the approved proposals are led by researchers, including Nelson and Roth, who have not been a … Ederson Jesus of Embrapa, Brazil’s public agricultural research corporation, is focused on microbial interactions …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists … scientists.”  Using samples of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets … species actively munch on a specific chemical compound. By feeding a microbial community a modified version of a … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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Tanja Woyke Elected to American Academy of Microbiology
… was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell … Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of California, Riverside, and virus ecology researcher Matt Sullivan of The Ohio State University. Luis …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen … Science Program proposal that started six years earlier, researchers put together what they called the Hungate1000, a … from laboratories around the world, encompassing 54 researchers from 14 organizations across nine countries. …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … Martin of the French National Institute for Agricultural Research (INRAE) focused on in-depth exploration of …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in … database to include a dedicated section for viruses, so researchers around the world would have better, easier …
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