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Synthetic Biology Lab
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JGIota: Looking Back at Sequencing for Soybeans
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Expanding Virophage Diversity
… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … this background, which focuses on cell biology and how the structure and function of chromosomes relate to inherited … within a species. A pangenome, then, consists of those sequences shared among all individuals in a given species as …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, … this because we have the resources as a user facility. The Metagenome Program team provided guidance and encouragement … walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to data …
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Synthetic Biology Informatics Group
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the …
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Cataloging the Microbes that Manage the Health of River Systems
… Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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Taking Stock of the Known and Unknown Microbial Space
… a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality … scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available in …
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Offerings & Capabilities
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